Releases

Here we include our release notes for past releases in sequential order.

v0.1.0

This is the first official release of PyCytoData with LTS.

Bug Fixes

  • Fix the default cofactor of PyCytoData.preprocess

  • Fix lineage channels for levine32 and samusik

Changes and New Features

  • PyCytoData.run_dr_methods now runs on lineage channels only

  • Add tutorials and references for documentation

  • Improve docstrings and general documentations

  • Add preprocessing options for loading benchmark datasets

  • Relax numpy dependency to >=1.20

  • Add descriptors for PyPI releases

Deprecations

  • Permanently remove FileIO.make_dir function for safety reasons

v0.0.1

  • This is the first official prerelease of the PyCytoData package.

  • We have proper support for the following workflows, including:

    • Downloading data

    • Using PyCytoData as CyTOF data analysis pipeline

    • FileIO

    • CyTOF DR Integration

  • Releases on PyPI and conda

Warning

There is a potential issue of compatibility with CytofDR on conda. If a problem occurs, try using pip instead.