Releases
Here we include our release notes for past releases in sequential order.
v0.1.2
This is a minor release that fixes a critical bug that affects all previous releases. Update is strongly recommended.
Bug Fixes
- Fixed a critical issue with
PyCytoData.load_dataset()
not working due to old web source down (#3) This issue stems from upstream web source, thus affecting all previous releases.
This update fixes the issue with a different implementation.
There is no implementation change.
- Fixed a critical issue with
Changes and New Features
No new feature added.
v0.1.1
This is a minor release with various bug fixes and documentation improvents.
Bug Fixes
Fixed a potential issue with loading benchmark datasets’ samples out of order (This behavior is not guaranteed, but a implementation detail)
Fixed an issue with
DataLoader.load_dataset
not recognizing downloaded datasetsFixed an issue with
preprocess.bead_normalization
having uninitialized array (#9)
Changes and New Features
No new feature added
Improved documentations with streamlined front page and updated links
Added docstrings for + and += operators
Updated references for CytofDR paper publication in Nature Communications
v0.1.0
This is the first official release of PyCytoData
with LTS.
Bug Fixes
Fix the default cofactor of
PyCytoData.preprocess
Fix lineage channels for
levine32
andsamusik
Changes and New Features
PyCytoData.run_dr_methods
now runs on lineage channels onlyAdd tutorials and references for documentation
Improve docstrings and general documentations
Add preprocessing options for loading benchmark datasets
Relax
numpy
dependency to >=1.20Add descriptors for PyPI releases
Deprecations
Permanently remove
FileIO.make_dir
function for safety reasons
v0.0.1
This is the first official prerelease of the
PyCytoData
package.- We have proper support for the following workflows, including:
Downloading data
Using PyCytoData as CyTOF data analysis pipeline
FileIO
CyTOF DR Integration
Releases on PyPI and conda
Warning
There is a potential issue of compatibility with CytofDR
on conda
. If a problem occurs, try
using pip instead.